diff --git a/LUFA/Build/lufa_dfu.mk b/LUFA/Build/lufa_dfu.mk
index d7edad6ada..b19df057ec 100644
--- a/LUFA/Build/lufa_dfu.mk
+++ b/LUFA/Build/lufa_dfu.mk
@@ -88,7 +88,7 @@ dfu: $(TARGET).hex $(MAKEFILE_LIST)
 # Programs in the target EEPROM memory using DFU-PROGRAMMER
 dfu-ee: $(TARGET).eep $(MAKEFILE_LIST)
 	@echo $(MSG_DFU_CMD) Programming EEPROM with dfu-programmer using \"$<\"
-	dfu-programmer $(MCU) eeprom-flash $<
+	dfu-programmer $(MCU) flash --eeprom $<
 	dfu-programmer $(MCU) reset
 
 # Phony build targets for this module
diff --git a/LUFA/DoxygenPages/ChangeLog.txt b/LUFA/DoxygenPages/ChangeLog.txt
index 443787aee5..636d469b69 100644
--- a/LUFA/DoxygenPages/ChangeLog.txt
+++ b/LUFA/DoxygenPages/ChangeLog.txt
@@ -25,6 +25,7 @@
   *   - The CDC, DFU, Mass Storage and Printer class bootloaders are not compatible with devices with the BOOTRST fuse set and will
   *     exit automatically unless an external reset was the last reset cause (thanks to Alex Kazik)
   *   - Added missing force-inline attribute to the endianness utility functions (thanks to Stefan Hellermann)
+  *   - Updated the DFU build system module to use updated EEPROM programming command arguments for dfu-programmer 0.6.2 or newer
   *
   *  <b>Fixed:</b>
   *   - Fixed broken XMEGA serial stream driver due to missing USART base pointer parameter (thanks to William Patterson)