diff --git a/Bootloaders/CDC/BootloaderAPITable.S b/Bootloaders/CDC/BootloaderAPITable.S
index a8e38861d5..cad8f71f60 100644
--- a/Bootloaders/CDC/BootloaderAPITable.S
+++ b/Bootloaders/CDC/BootloaderAPITable.S
@@ -28,41 +28,44 @@
   this software.
 */
 
-; Bootloader API Jump Table
-.section .apitable, "ax"
-
 ; Trampolines to actual API implementations if the target address is outside the
 ; range of a rjmp instruction (can happen with large bootloader sections)
-.org 0
-BootloaderAPI_ErasePage_Trampoline:
-	jmp BootloaderAPI_ErasePage
-BootloaderAPI_WritePage_Trampoline:
-	jmp BootloaderAPI_WritePage
-BootloaderAPI_FillWord_Trampoline:
-	jmp BootloaderAPI_FillWord
-BootloaderAPI_ReadSignature_Trampoline:
-	jmp BootloaderAPI_ReadSignature
-BootloaderAPI_ReadFuse_Trampoline:
-	jmp BootloaderAPI_ReadFuse
-BootloaderAPI_ReadLock_Trampoline:
-	jmp BootloaderAPI_ReadLock
-BootloaderAPI_WriteLock_Trampoline:
-	jmp BootloaderAPI_WriteLock
-BootloaderAPU_UNUSED1:
-	ret
-BootloaderAPU_UNUSED2:
-	ret
-BootloaderAPU_UNUSED3:
-	ret
-BootloaderAPU_UNUSED4:
-	ret
-BootloaderAPU_UNUSED5:
-	ret
+.section .apitable_trampolines, "ax"
+.global BootloaderAPI_Trampolines
+BootloaderAPI_Trampolines:
+
+	BootloaderAPI_ErasePage_Trampoline:
+		jmp BootloaderAPI_ErasePage
+	BootloaderAPI_WritePage_Trampoline:
+		jmp BootloaderAPI_WritePage
+	BootloaderAPI_FillWord_Trampoline:
+		jmp BootloaderAPI_FillWord
+	BootloaderAPI_ReadSignature_Trampoline:
+		jmp BootloaderAPI_ReadSignature
+	BootloaderAPI_ReadFuse_Trampoline:
+		jmp BootloaderAPI_ReadFuse
+	BootloaderAPI_ReadLock_Trampoline:
+		jmp BootloaderAPI_ReadLock
+	BootloaderAPI_WriteLock_Trampoline:
+		jmp BootloaderAPI_WriteLock
+	BootloaderAPU_UNUSED1:
+		ret
+	BootloaderAPU_UNUSED2:
+		ret
+	BootloaderAPU_UNUSED3:
+		ret
+	BootloaderAPU_UNUSED4:
+		ret
+	BootloaderAPU_UNUSED5:
+		ret
+
+
 
 ; API function jump table
-.org (96 - 32)
+.section .apitable_jumptable, "ax"
 .global BootloaderAPI_JumpTable
 BootloaderAPI_JumpTable:
+
 	rjmp BootloaderAPI_ErasePage_Trampoline
 	rjmp BootloaderAPI_WritePage_Trampoline
 	rjmp BootloaderAPI_FillWord_Trampoline
@@ -76,10 +79,13 @@ BootloaderAPI_JumpTable:
 	rjmp BootloaderAPU_UNUSED4 ; UNUSED ENTRY 4
 	rjmp BootloaderAPU_UNUSED5 ; UNUSED ENTRY 5
 
+
+
 ; Bootloader table signatures and information
-.org (96 - 8)
-BootloaderAPI_Signatures:
+.section .apitable_signatures, "ax"
 .global BootloaderAPI_Signatures
+BootloaderAPI_Signatures:
+
 	.long BOOT_START_ADDR ; Start address of the bootloader
-	.word 0xCDC1 ; Signature for the CDC class bootloader, V1
+	.word 0xDFB1 ; Signature for the DFU class bootloader, V1
 	.word 0xDCFB ; Signature for a LUFA class bootloader
diff --git a/Bootloaders/CDC/makefile b/Bootloaders/CDC/makefile
index 68bf4c63ff..2c21fb69f4 100644
--- a/Bootloaders/CDC/makefile
+++ b/Bootloaders/CDC/makefile
@@ -15,10 +15,15 @@
 FLASH_SIZE_KB        := 128
 BOOT_SECTION_SIZE_KB := 8
 
-# Bootloader address calculations (requires the "bc" unix utility) - do
-# not modify these calculations, but rather modify the depedant values above.
+# Bootloader address calculations (requires the "bc" unix utility) and
+# API section start directives - do not modify these macros, but rather
+# modify the depedant values above.
 BOOT_START           := 0x$(shell echo "obase=16; ($(FLASH_SIZE_KB) - $(BOOT_SECTION_SIZE_KB)) * 1024" | bc)
-BOOT_API_TABLESTART  := 0x$(shell echo "obase=16; (($(FLASH_SIZE_KB) * 1024) - 96)" | bc)
+BOOT_SEC_OFFSET       = 0x$(shell echo "obase=16; (($(FLASH_SIZE_KB) * 1024) - $(strip $(1)))" | bc)
+BOOT_SECTION_LD_FLAG  = -Wl,--section-start=.apitable_$(strip $(1))=$(call BOOT_SEC_OFFSET, $(3)) -Wl,--undefined=BootloaderAPI_$(strip $(2))
+BOOT_API_LD_FLAGS    := $(call BOOT_SECTION_LD_FLAG, trampolines, Trampolines, (48 + 32 + 8))
+BOOT_API_LD_FLAGS    += $(call BOOT_SECTION_LD_FLAG, jumptable,   JumpTable,   (32 + 8))
+BOOT_API_LD_FLAGS    += $(call BOOT_SECTION_LD_FLAG, signatures,  Signatures,  8)
 
 MCU          = at90usb1287
 ARCH         = AVR8
@@ -30,7 +35,7 @@ TARGET       = BootloaderCDC
 SRC          = $(TARGET).c Descriptors.c BootloaderAPI.c BootloaderAPITable.S $(LUFA_SRC_USB)
 LUFA_PATH    = ../../LUFA/
 CC_FLAGS     = -DUSE_LUFA_CONFIG_HEADER -IConfig/ -DBOOT_START_ADDR=$(BOOT_START)
-LD_FLAGS     = -Wl,--section-start=.text=$(BOOT_START) -Wl,--section-start=.apitable=$(BOOT_API_TABLESTART) -Wl,--undefined=BootloaderAPI_JumpTable
+LD_FLAGS     = -Wl,--section-start=.text=$(BOOT_START) $(BOOT_API_LD_FLAGS)
 
 # Default target
 all:
diff --git a/Bootloaders/DFU/BootloaderAPITable.S b/Bootloaders/DFU/BootloaderAPITable.S
index 18ae390fc7..cad8f71f60 100644
--- a/Bootloaders/DFU/BootloaderAPITable.S
+++ b/Bootloaders/DFU/BootloaderAPITable.S
@@ -28,41 +28,44 @@
   this software.
 */
 
-; Bootloader API Jump Table
-.section .apitable, "ax"
-
 ; Trampolines to actual API implementations if the target address is outside the
 ; range of a rjmp instruction (can happen with large bootloader sections)
-.org 0
-BootloaderAPI_ErasePage_Trampoline:
-	jmp BootloaderAPI_ErasePage
-BootloaderAPI_WritePage_Trampoline:
-	jmp BootloaderAPI_WritePage
-BootloaderAPI_FillWord_Trampoline:
-	jmp BootloaderAPI_FillWord
-BootloaderAPI_ReadSignature_Trampoline:
-	jmp BootloaderAPI_ReadSignature
-BootloaderAPI_ReadFuse_Trampoline:
-	jmp BootloaderAPI_ReadFuse
-BootloaderAPI_ReadLock_Trampoline:
-	jmp BootloaderAPI_ReadLock
-BootloaderAPI_WriteLock_Trampoline:
-	jmp BootloaderAPI_WriteLock
-BootloaderAPU_UNUSED1:
-	ret
-BootloaderAPU_UNUSED2:
-	ret
-BootloaderAPU_UNUSED3:
-	ret
-BootloaderAPU_UNUSED4:
-	ret
-BootloaderAPU_UNUSED5:
-	ret
+.section .apitable_trampolines, "ax"
+.global BootloaderAPI_Trampolines
+BootloaderAPI_Trampolines:
+
+	BootloaderAPI_ErasePage_Trampoline:
+		jmp BootloaderAPI_ErasePage
+	BootloaderAPI_WritePage_Trampoline:
+		jmp BootloaderAPI_WritePage
+	BootloaderAPI_FillWord_Trampoline:
+		jmp BootloaderAPI_FillWord
+	BootloaderAPI_ReadSignature_Trampoline:
+		jmp BootloaderAPI_ReadSignature
+	BootloaderAPI_ReadFuse_Trampoline:
+		jmp BootloaderAPI_ReadFuse
+	BootloaderAPI_ReadLock_Trampoline:
+		jmp BootloaderAPI_ReadLock
+	BootloaderAPI_WriteLock_Trampoline:
+		jmp BootloaderAPI_WriteLock
+	BootloaderAPU_UNUSED1:
+		ret
+	BootloaderAPU_UNUSED2:
+		ret
+	BootloaderAPU_UNUSED3:
+		ret
+	BootloaderAPU_UNUSED4:
+		ret
+	BootloaderAPU_UNUSED5:
+		ret
+
+
 
 ; API function jump table
-.org (96 - 32)
+.section .apitable_jumptable, "ax"
 .global BootloaderAPI_JumpTable
 BootloaderAPI_JumpTable:
+
 	rjmp BootloaderAPI_ErasePage_Trampoline
 	rjmp BootloaderAPI_WritePage_Trampoline
 	rjmp BootloaderAPI_FillWord_Trampoline
@@ -76,10 +79,13 @@ BootloaderAPI_JumpTable:
 	rjmp BootloaderAPU_UNUSED4 ; UNUSED ENTRY 4
 	rjmp BootloaderAPU_UNUSED5 ; UNUSED ENTRY 5
 
+
+
 ; Bootloader table signatures and information
-.org (96 - 8)
-BootloaderAPI_Signatures:
+.section .apitable_signatures, "ax"
 .global BootloaderAPI_Signatures
+BootloaderAPI_Signatures:
+
 	.long BOOT_START_ADDR ; Start address of the bootloader
 	.word 0xDFB1 ; Signature for the DFU class bootloader, V1
 	.word 0xDCFB ; Signature for a LUFA class bootloader
diff --git a/Bootloaders/DFU/makefile b/Bootloaders/DFU/makefile
index 75b36ec639..3ee61fc8d0 100644
--- a/Bootloaders/DFU/makefile
+++ b/Bootloaders/DFU/makefile
@@ -15,10 +15,15 @@
 FLASH_SIZE_KB        := 128
 BOOT_SECTION_SIZE_KB := 8
 
-# Bootloader address calculations (requires the "bc" unix utility) - do
-# not modify these calculations, but rather modify the depedant values above.
+# Bootloader address calculations (requires the "bc" unix utility) and
+# API section start directives - do not modify these macros, but rather
+# modify the depedant values above.
 BOOT_START           := 0x$(shell echo "obase=16; ($(FLASH_SIZE_KB) - $(BOOT_SECTION_SIZE_KB)) * 1024" | bc)
-BOOT_API_TABLESTART  := 0x$(shell echo "obase=16; (($(FLASH_SIZE_KB) * 1024) - 96)" | bc)
+BOOT_SEC_OFFSET       = 0x$(shell echo "obase=16; (($(FLASH_SIZE_KB) * 1024) - $(strip $(1)))" | bc)
+BOOT_SECTION_LD_FLAG  = -Wl,--section-start=.apitable_$(strip $(1))=$(call BOOT_SEC_OFFSET, $(3)) -Wl,--undefined=BootloaderAPI_$(strip $(2))
+BOOT_API_LD_FLAGS    := $(call BOOT_SECTION_LD_FLAG, trampolines, Trampolines, (48 + 32 + 8))
+BOOT_API_LD_FLAGS    += $(call BOOT_SECTION_LD_FLAG, jumptable,   JumpTable,   (32 + 8))
+BOOT_API_LD_FLAGS    += $(call BOOT_SECTION_LD_FLAG, signatures,  Signatures,  8)
 
 MCU          = at90usb1287
 ARCH         = AVR8
@@ -30,7 +35,7 @@ TARGET       = BootloaderDFU
 SRC          = $(TARGET).c Descriptors.c BootloaderAPI.c BootloaderAPITable.S $(LUFA_SRC_USB)
 LUFA_PATH    = ../../LUFA/
 CC_FLAGS     = -DUSE_LUFA_CONFIG_HEADER -IConfig/ -DBOOT_START_ADDR=$(BOOT_START)
-LD_FLAGS     = -Wl,--section-start=.text=$(BOOT_START) -Wl,--section-start=.apitable=$(BOOT_API_TABLESTART) -Wl,--undefined=BootloaderAPI_JumpTable
+LD_FLAGS     = -Wl,--section-start=.text=$(BOOT_START) $(BOOT_API_LD_FLAGS)
 
 # Default target
 all: