Update Doxygen configuration files to the latest version.

Bootloaders/CDC/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Bootloaders/DFU/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Bootloaders/HID/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -770,8 +756,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -801,9 +789,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -863,6 +851,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -948,7 +950,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1217,7 +1219,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1240,6 +1242,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1265,8 +1272,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1337,7 +1344,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1360,6 +1367,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1504,6 +1518,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1655,6 +1684,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1709,7 +1744,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1751,7 +1786,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Bootloaders/MassStorage/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Bootloaders/Printer/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/AudioInput/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/AudioOutput/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/DualVirtualSerial/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/GenericHID/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/Joystick/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/Keyboard/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/KeyboardMouse/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/KeyboardMouseMultiReport/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/MIDI/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/MassStorage/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/MassStorageKeyboard/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/Mouse/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/RNDISEthernet/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/VirtualSerial/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/VirtualSerialMassStorage/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/ClassDriver/VirtualSerialMouse/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/AudioInput/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/AudioOutput/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/DualVirtualSerial/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/GenericHID/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/Joystick/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/Keyboard/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/KeyboardMouse/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/MIDI/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/MassStorage/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/Mouse/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/RNDISEthernet/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Device/LowLevel/VirtualSerial/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/DualRole/ClassDriver/MouseHostDevice/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/AndroidAccessoryHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/AudioInputHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/AudioOutputHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/JoystickHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/KeyboardHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/KeyboardHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/MIDIHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/MassStorageHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/MouseHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/MouseHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/PrinterHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/RNDISEthernetHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/StillImageHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/ClassDriver/VirtualSerialHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/AndroidAccessoryHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/AudioInputHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/AudioOutputHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/GenericHIDHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/JoystickHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/KeyboardHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/KeyboardHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/MIDIHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/MassStorageHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/MouseHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/MouseHostWithParser/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/PrinterHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/RNDISEthernetHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/StillImageHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Demos/Host/LowLevel/VirtualSerialHost/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

LUFA/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = YES
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -771,8 +757,10 @@ IMAGE_PATH             = ./
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -802,9 +790,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -864,6 +852,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -949,7 +951,7 @@ HTML_EXTRA_STYLESHEET  = ./DoxygenPages/Style/Style.css
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1218,7 +1220,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1241,6 +1243,11 @@ MATHJAX_RELPATH        = http://www.mathjax.org/mathjax
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1266,8 +1273,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1338,7 +1345,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1361,6 +1368,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1505,6 +1519,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1657,6 +1686,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1711,7 +1746,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1753,7 +1788,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

LUFA/DoxygenPages/CompileTimeTokens.txt

@@ -17,7 +17,7 @@
  *  \section Sec_SummaryNonUSBTokens Non USB Related Tokens
  *  This section describes compile tokens which affect non-USB sections of the LUFA library.
  *
- *  - <b>DISABLE_TERMINAL_CODES</b> - (\ref Group_Terminal) - <i>All Architectures</i> \n
+ *  \li <b>DISABLE_TERMINAL_CODES</b> - (\ref Group_Terminal) - <i>All Architectures</i> \n
  *      If an application contains ANSI terminal control codes listed in TerminalCodes.h, it might be desired to remove them
  *      at compile time for use with a terminal which is non-ANSI control code aware, without modifying the source code. If
  *      this token is defined, all ANSI control codes in the application code from the TerminalCodes.h header are removed from
@@ -27,34 +27,34 @@
  *  \section Sec_SummaryUSBClassTokens USB Class Driver Related Tokens
  *  This section describes compile tokens which affect USB class-specific drivers in the LUFA library.
  *
- *  - <b>HID_HOST_BOOT_PROTOCOL_ONLY</b> - (\ref Group_USBClassHIDHost) - <i>All Architectures</i> \n
+ *  \li <b>HID_HOST_BOOT_PROTOCOL_ONLY</b> - (\ref Group_USBClassHIDHost) - <i>All Architectures</i> \n
  *      By default, the USB HID Host class driver is designed to work with HID devices using either the Boot or Report HID
  *      communication protocols. On devices where the Report protocol is not used (i.e. in applications where only basic
  *      Mouse or Keyboard operation is desired, using boot compatible devices), the code responsible for the Report protocol
  *      mode can be removed to save space in the compiled application by defining this token. When defined, it is still necessary
  *      to explicitly put the attached device into Boot protocol mode via a call to \ref HID_Host_SetBootProtocol().
  *
- *  - <b>HID_STATETABLE_STACK_DEPTH</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
+ *  \li <b>HID_STATETABLE_STACK_DEPTH</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
  *      HID reports may contain PUSH and POP elements, to store and retrieve the current HID state table onto a stack. This
  *      allows for reports to save the state table before modifying it slightly for a data item, and then restore the previous
  *      state table in a compact manner. This token may be defined to a non-zero 8-bit value to give the maximum depth of the state
  *      table stack. If not defined, this defaults to the value indicated in the HID.h file documentation.
  *
- *  - <b>HID_USAGE_STACK_DEPTH</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
+ *  \li <b>HID_USAGE_STACK_DEPTH</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
  *      HID reports generally contain many USAGE elements, which are assigned to INPUT, OUTPUT and FEATURE items in succession
  *      when multiple items are defined at once (via REPORT COUNT elements). This allows for several items to be defined with
  *      different usages in a compact manner. This token may be defined to a non-zero 8-bit value to set the maximum depth of the
  *      usage stack, indicating the maximum number of USAGE items which can be stored temporarily until the next INPUT, OUTPUT
  *      and FEATURE item. If not defined, this defaults to the value indicated in the HID.h file documentation.
  *
- *  - <b>HID_MAX_COLLECTIONS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
+ *  \li <b>HID_MAX_COLLECTIONS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
  *      HID reports generally contain several COLLECTION elements, used to group related data items together. Collection information
  *      is stored separately in the processed usage structure (and referred to by the data elements in the structure) to save space.
  *      This token may be defined to a non-zero 8-bit value to set the maximum number of COLLECTION items which can be processed by the
  *      parser into the resultant processed report structure. If not defined, this defaults to the value indicated in the HID.h file
  *      documentation.
  *
- *  - <b>HID_MAX_REPORTITEMS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
+ *  \li <b>HID_MAX_REPORTITEMS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
  *      All HID reports contain one or more INPUT, OUTPUT and/or FEATURE items describing the data which can be sent to and from the HID
  *      device. Each item has associated usages, bit offsets in the item reports and other associated data indicating the manner in which
  *      the report data should be interpreted by the host. This token may be defined to a non-zero 8-bit value to set the maximum number of
@@ -62,7 +62,7 @@
  *      If a item has a multiple count (i.e. a REPORT COUNT of more than 1), each item in the report count is placed separately in the
  *      processed HID report table. If not defined, this defaults to the value indicated in the HID.h file documentation.
  *
- *  - <b>HID_MAX_REPORT_IDS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
+ *  \li <b>HID_MAX_REPORT_IDS</b>=<i>x</i> - (\ref Group_HIDParser) - <i>All Architectures</i> \n
  *      HID reports may contain several report IDs, to logically distinguish grouped device data from one another - for example, a combination
  *      keyboard and mouse might use report IDs to separate the keyboard reports from the mouse reports. In order to determine the size of each
  *      report, and thus know how many bytes must be read or written, the size of each report (IN, OUT and FEATURE) must be calculated and
@@ -70,7 +70,7 @@
  *      and their sizes calculated/stored into the resultant processed report structure. If not defined, this defaults to the value indicated in
  *      the HID.h file documentation.
  *
- *  - <b>NO_CLASS_DRIVER_AUTOFLUSH</b> - (\ref Group_USBClassDrivers) - <i>All Architectures</i> \n
+ *  \li <b>NO_CLASS_DRIVER_AUTOFLUSH</b> - (\ref Group_USBClassDrivers) - <i>All Architectures</i> \n
  *      Many of the device and host mode class drivers automatically flush any data waiting to be written to an interface, when the corresponding
  *      USB management task is executed. This is usually desirable to ensure that any queued data is sent as soon as possible once and new data is
  *      constructed in the main program loop. However, if flushing is to be controlled manually by the user application via the *_Flush() commands,
@@ -81,35 +81,35 @@
  *  \section Sec_SummaryUSBTokens General USB Driver Related Tokens
  *  This section describes compile tokens which affect USB driver stack as a whole in the LUFA library.
  *
- *  - <b>ORDERED_EP_CONFIG</b> - (\ref Group_EndpointManagement , \ref Group_PipeManagement) - <i>AVR8, UC3</i> \n
+ *  \li <b>ORDERED_EP_CONFIG</b> - (\ref Group_EndpointManagement , \ref Group_PipeManagement) - <i>AVR8, UC3</i> \n
  *      The USB AVRs do not allow for Endpoints and Pipes to be configured out of order; they <i>must</i> be configured in an ascending order to
  *      prevent data corruption issues. However, by default LUFA employs a workaround to allow for unordered Endpoint/Pipe initialization. This compile
  *      time token may be used to restrict the initialization order to ascending indexes only in exchange for a smaller compiled binary size. Use
  *      caution when applied to applications using the library USB Class drivers; the user application must ensure that all endpoints and pipes are
  *      allocated sequentially.
  *
- *  - <b>USE_STATIC_OPTIONS</b>=<i>x</i> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
+ *  \li <b>USE_STATIC_OPTIONS</b>=<i>x</i> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
  *      By default, the USB_Init() function accepts dynamic options at runtime to alter the library behaviour, including whether the USB pad
  *      voltage regulator is enabled, and the device speed when in device mode. By defining this token to a mask comprised of the USB options
  *      mask defines usually passed as the Options parameter to USB_Init(), the resulting compiled binary can be decreased in size by removing
  *      the dynamic options code, and replacing it with the statically set options. When defined, the USB_Init() function no longer accepts an
  *      Options parameter.
  *
- *  - <b>USB_DEVICE_ONLY</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
+ *  \li <b>USB_DEVICE_ONLY</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
  *      For the USB AVR models supporting both device and host USB modes, the USB_Init() function contains a Mode parameter which specifies the
  *      mode the library should be initialized to. If only device mode is required, the code for USB host mode can be removed from the binary to
  *      save space. When defined, the USB_Init() function no longer accepts a Mode parameter. This define is irrelevant on smaller USB AVRs which
  *      do not support host mode.
  *
- *  - <b>USB_HOST_ONLY</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
+ *  \li <b>USB_HOST_ONLY</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
  *      Same as USB_DEVICE_ONLY, except the library is fixed to USB host mode rather than USB device mode. Not available on some USB AVR models.
  *
- *  - <b>USB_STREAM_TIMEOUT_MS</b>=<i>x</i> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
+ *  \li <b>USB_STREAM_TIMEOUT_MS</b>=<i>x</i> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
  *      When endpoint and/or pipe stream functions are used, by default there is a timeout between each transfer which the connected device or host
  *      must satisfy, or the stream function aborts the remaining data transfer. This token may be defined to a non-zero 16-bit value to set the timeout
  *      period for stream transfers, specified in milliseconds. If not defined, the default value specified in LowLevel.h is used instead.
  *
- *  - <b>NO_LIMITED_CONTROLLER_CONNECT</b> - (\ref Group_Events) - <i>AVR8 Only</i> \n
+ *  \li <b>NO_LIMITED_CONTROLLER_CONNECT</b> - (\ref Group_Events) - <i>AVR8 Only</i> \n
  *      On the smaller USB AVRs, the USB controller lacks VBUS events to determine the physical connection state of the USB bus to a host. In lieu of
  *      VBUS events, the library attempts to determine the connection state via the bus suspension and wake up events instead. This however may be
  *      slightly inaccurate due to the possibility of the host suspending the bus while the device is still connected. If accurate connection status is
@@ -117,7 +117,7 @@
  *      can be accurately set and the \ref EVENT_USB_Device_Connect() and \ref EVENT_USB_Device_Disconnect() events manually raised by the RAISE_EVENT macro.
  *      When defined, this token disables the library's auto-detection of the connection state by the aforementioned suspension and wake up events.
  *
- *  - <b>NO_SOF_EVENTS</b> - (\ref Group_Events) - <i>All Architectures</i> \n
+ *  \li <b>NO_SOF_EVENTS</b> - (\ref Group_Events) - <i>All Architectures</i> \n
  *      By default, there exists a LUFA application event for the start of each USB frame while the USB bus is not suspended in either host or device mode.
  *      This event can be selectively enabled or disabled by calling the appropriate device or host mode function. When this compile time token is defined,
  *      the ability to receive USB Start of Frame events via the \ref EVENT_USB_Device_StartOfFrame() or \ref EVENT_USB_Host_StartOfFrame() events is removed,
@@ -127,62 +127,62 @@
  *  \section Sec_SummaryUSBDeviceTokens USB Device Mode Driver Related Tokens
  *  This section describes compile tokens which affect USB driver stack of the LUFA library when used in Device mode.
  *
- *  - <b>USE_RAM_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
+ *  \li <b>USE_RAM_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
  *      Define this token to indicate to the USB driver that all device descriptors are stored in RAM, rather than being located in any one
  *      of the AVR's memory spaces. RAM descriptors may be desirable in applications where the descriptors need to be modified at runtime.
  *
- *  - <b>USE_FLASH_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
+ *  \li <b>USE_FLASH_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
  *      Similar to USE_RAM_DESCRIPTORS, but all descriptors are stored in the AVR's FLASH memory rather than RAM.
  *
- *  - <b>USE_EEPROM_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
+ *  \li <b>USE_EEPROM_DESCRIPTORS</b> - (\ref Group_StdDescriptors) - <i>AVR8 Only</i> \n
  *      Similar to USE_RAM_DESCRIPTORS, but all descriptors are stored in the AVR's EEPROM memory rather than RAM.
  *
- *  - <b>NO_INTERNAL_SERIAL</b> - (\ref Group_StdDescriptors) - <i>All Architectures</i> \n
+ *  \li <b>NO_INTERNAL_SERIAL</b> - (\ref Group_StdDescriptors) - <i>All Architectures</i> \n
  *      Some AVR models contain a unique serial number which can be used as the device serial number, while in device mode. This allows
  *      the host to uniquely identify the device regardless of if it is moved between USB ports on the same computer, allowing allocated
  *      resources (such as drivers, COM Port number allocations) to be preserved. This is not needed in many apps, and so the code that
  *      performs this task can be disabled by defining this option and passing it to the compiler via the -D switch.
  *
- *  - <b>FIXED_CONTROL_ENDPOINT_SIZE</b>=<i>x</i> - (\ref Group_EndpointManagement) - <i>All Architectures</i> \n
+ *  \li <b>FIXED_CONTROL_ENDPOINT_SIZE</b>=<i>x</i> - (\ref Group_EndpointManagement) - <i>All Architectures</i> \n
  *      By default, the library determines the size of the control endpoint (when in device mode) by reading the device descriptor.
  *      Normally this reduces the amount of configuration required for the library, allows the value to change dynamically (if
  *      descriptors are stored in EEPROM or RAM rather than flash memory) and reduces code maintenance. However, this token can be
  *      defined to a non-zero value instead to give the size in bytes of the control endpoint, to reduce the size of the compiled
  *      binary.
  *
- *  - <b>DEVICE_STATE_AS_GPIOR</b> - (\ref Group_Device) - <i>AVR8 Only</i> \n
+ *  \li <b>DEVICE_STATE_AS_GPIOR</b> - (\ref Group_Device) - <i>AVR8 Only</i> \n
  *      One of the most frequently used global variables in the stack is the USB_DeviceState global, which indicates the current state of
  *      the Device State Machine. To reduce the amount of code and time required to access and modify this global in an application, this token
  *      may be defined to a value between 0 and 2 to fix the state variable into one of the three general purpose IO registers inside the AVR
  *      reserved for application use. When defined, the corresponding GPIOR register should not be used within the user application except
  *      implicitly via the library APIs.
  *
- *  - <b>FIXED_NUM_CONFIGURATIONS</b>=<i>x</i> - (\ref Group_Device) - <i>All Architectures</i> \n
+ *  \li <b>FIXED_NUM_CONFIGURATIONS</b>=<i>x</i> - (\ref Group_Device) - <i>All Architectures</i> \n
  *      By default, the library determines the number of configurations a USB device supports by reading the device descriptor. This reduces
  *      the amount of configuration required to set up the library, and allows the value to change dynamically (if descriptors are stored in
  *      EEPROM or RAM rather than flash memory) and reduces code maintenance. However, this value may be fixed via this token in the project
  *      makefile to reduce the compiled size of the binary at the expense of flexibility.
  *
- *  - <b>CONTROL_ONLY_DEVICE</b> - (\ref Group_Device) - <i>All Architectures</i> \n
+ *  \li <b>CONTROL_ONLY_DEVICE</b> - (\ref Group_Device) - <i>All Architectures</i> \n
  *      In some limited USB device applications, there are no device endpoints other than the control endpoint; i.e. all device communication
  *      is through control endpoint requests. Defining this token will remove several features related to the selection and control of device
  *      endpoints internally, saving space. Generally, this is usually only useful in (some) bootloaders and is best avoided.
  *
- *  - <b>MAX_ENDPOINT_INDEX</b> - (\ref Group_Device) - <i>XMEGA Only</i> \n
+ *  \li <b>MAX_ENDPOINT_INDEX</b> - (\ref Group_Device) - <i>XMEGA Only</i> \n
  *      Defining this value to the highest index (not address - this excludes the direction flag) endpoint within the device will restrict the
  *      number of FIFOs created internally for the endpoint buffers, reducing the total RAM usage.
  *
- *  - <b>INTERRUPT_CONTROL_ENDPOINT</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
+ *  \li <b>INTERRUPT_CONTROL_ENDPOINT</b> - (\ref Group_USBManagement) - <i>All Architectures</i> \n
  *      Some applications prefer to not call the USB_USBTask() management task regularly while in device mode, as it can complicate code significantly.
  *      Instead, when device mode is used this token can be passed to the library via the -D switch to allow the library to manage the USB control
  *      endpoint entirely via USB controller interrupts asynchronously to the user application. When defined, USB_USBTask() does not need to be called
  *      when in USB device mode.
  *
- *  - <b>NO_DEVICE_REMOTE_WAKEUP</b> - (\ref Group_Device) - <i>All Architectures</i> \n
+ *  \li <b>NO_DEVICE_REMOTE_WAKEUP</b> - (\ref Group_Device) - <i>All Architectures</i> \n
  *      Many devices do not require the use of the Remote Wakeup features of USB, used to wake up the USB host when suspended. On these devices,
  *      the code required to manage device Remote Wakeup can be disabled by defining this token and passing it to the library via the -D switch.
  *
- *  - <b>NO_DEVICE_SELF_POWER</b> - (\ref Group_Device) - <i>All Architectures</i> \n
+ *  \li <b>NO_DEVICE_SELF_POWER</b> - (\ref Group_Device) - <i>All Architectures</i> \n
  *      USB devices may be bus powered, self powered, or a combination of both. When a device can be both bus powered and self powered, the host may
  *      query the device to determine the current power source, via \ref USB_Device_CurrentlySelfPowered. For solely bus powered devices, this global
  *      and the code required to manage it may be disabled by passing this token to the library via the -D switch.
@@ -192,31 +192,31 @@
  *
  *  This section describes compile tokens which affect USB driver stack of the LUFA library when used in Host mode.
  *
- *  - <b>HOST_STATE_AS_GPIOR</b> - (\ref Group_Host) - <i>AVR8 Only</i> \n
+ *  \li <b>HOST_STATE_AS_GPIOR</b> - (\ref Group_Host) - <i>AVR8 Only</i> \n
  *      One of the most frequently used global variables in the stack is the USB_HostState global, which indicates the current state of
  *      the Host State Machine. To reduce the amount of code and time required to access and modify this global in an application, this token
  *      may be defined to a value between 0 and 2 to fix the state variable into one of the three general purpose IO registers inside the AVR
  *      reserved for application use. When defined, the corresponding GPIOR register should not be used within the user application except
  *      implicitly via the library APIs.
  *
- *  - <b>USB_HOST_TIMEOUT_MS</b>=<i>x</i> - (\ref Group_Host) - <i>All Architectures</i> \n
+ *  \li <b>USB_HOST_TIMEOUT_MS</b>=<i>x</i> - (\ref Group_Host) - <i>All Architectures</i> \n
  *      When a control transfer is initiated in host mode to an attached device, a timeout is used to abort the transfer if the attached
  *      device fails to respond within the timeout period. This token may be defined to a non-zero 16-bit value to set the timeout period for
  *      control transfers, specified in milliseconds. If not defined, the default value specified in Host.h is used instead.
  *
- *  - <b>HOST_DEVICE_SETTLE_DELAY_MS</b>=<i>x</i> - (\ref Group_Host) - <i>All Architectures</i> \n
+ *  \li <b>HOST_DEVICE_SETTLE_DELAY_MS</b>=<i>x</i> - (\ref Group_Host) - <i>All Architectures</i> \n
  *      Some devices require a delay of up to 5 seconds after they are connected to VBUS before the enumeration process can be started, or
  *      they will fail to enumerate correctly. By placing a delay before the enumeration process, it can be ensured that the bus has settled
  *      back to a known idle state before communications occur with the device. This token may be defined to a 16-bit value to set the device
  *      settle period, specified in milliseconds. If not defined, the default value specified in Host.h is used instead.
  *
- *  - <b>INVERTED_VBUS_ENABLE_LINE</b> - (\ref Group_Host) - <i>All Architectures</i> \n
+ *  \li <b>INVERTED_VBUS_ENABLE_LINE</b> - (\ref Group_Host) - <i>All Architectures</i> \n
  *      If enabled, this will indicate that the USB target VBUS line polarity is inverted; i.e. it should be pulled low to enable VBUS to the
  *      target, and pulled high to stop the target VBUS generation.
- *
+ *      \n
  *      \attention On AVR8 architecture devices, this compile time option requires \c NO_AUTO_VBUS_MANAGEMENT to be set.
  *
- *  - <b>NO_AUTO_VBUS_MANAGEMENT</b> - (\ref Group_Host) - <i>All Architectures</i> \n
+ *  \li <b>NO_AUTO_VBUS_MANAGEMENT</b> - (\ref Group_Host) - <i>All Architectures</i> \n
  *      Disables the automatic management of VBUS to the target, i.e. automatic shut down in the even of an overcurrent situation. When enabled, VBUS
  *      is enabled while the USB controller is initialized in USB Host mode.
  */

LUFA/DoxygenPages/ExportingLibrary.txt

@@ -29,6 +29,7 @@
  *   - Documentation/
  *   - DoxygenPages/
  *   - CodeTemplates/
+ *   - StudioIntegration/
  *
  *  If required, files from the CodeTemplates/ subdirectory may be copied to your IDE project as needed.
  *

Projects/AVRISP-MKII/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/Benito/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/HIDReportViewer/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/LEDNotifier/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -772,8 +758,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -803,9 +791,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -865,6 +853,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -950,7 +952,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1219,7 +1221,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1242,6 +1244,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1267,8 +1274,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1339,7 +1346,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1362,6 +1369,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1506,6 +1520,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1656,6 +1685,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1710,7 +1745,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1752,7 +1787,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/MIDIToneGenerator/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/Magstripe/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/MediaController/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/MissileLauncher/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/RelayBoard/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/SerialToLCD/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/TempDataLogger/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -770,8 +756,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -801,9 +789,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -863,6 +851,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -948,7 +950,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1217,7 +1219,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1240,6 +1242,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1265,8 +1272,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1337,7 +1344,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1360,6 +1367,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1504,6 +1518,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/USBtoSerial/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/Webserver/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -770,8 +756,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -801,9 +789,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -863,6 +851,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -948,7 +950,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1217,7 +1219,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1240,6 +1242,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1265,8 +1272,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1337,7 +1344,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1360,6 +1367,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1504,6 +1518,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1654,6 +1683,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1708,7 +1743,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1750,7 +1785,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10

Projects/XPLAINBridge/Doxygen.conf

@@ -1,8 +1,10 @@
-# Doxyfile 1.8.3.1
+# Doxyfile 1.8.4
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
+# All text after a double hash (##) is considered a comment and is placed
+# in front of the TAG it is preceding .
 # All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
@@ -70,9 +72,9 @@ CREATE_SUBDIRS         = NO
 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
+# messages), Korean, Korean-en, Latvian, Lithuanian, Norwegian, Macedonian,
+# Persian, Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic,
+# Slovak, Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
 
@@ -262,10 +264,10 @@ EXTENSION_MAPPING      =
 
 MARKDOWN_SUPPORT       = NO
 
-# When enabled doxygen tries to link words that correspond to documented classes,
-# or namespaces to their corresponding documentation. Such a link can be
-# prevented in individual cases by by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
+# When enabled doxygen tries to link words that correspond to documented
+# classes, or namespaces to their corresponding documentation. Such a link can
+# be prevented in individual cases by by putting a % sign in front of the word
+# or globally by setting AUTOLINK_SUPPORT to NO.
 
 AUTOLINK_SUPPORT       = YES
 
@@ -321,11 +323,11 @@ SUBGROUPING            = YES
 INLINE_GROUPED_CLASSES = NO
 
 # When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
-# unions with only public data fields will be shown inline in the documentation
-# of the scope in which they are defined (i.e. file, namespace, or group
-# documentation), provided this scope is documented. If set to NO (the default),
-# structs, classes, and unions are shown on a separate page (for HTML and Man
-# pages) or section (for LaTeX and RTF).
+# unions with only public data fields or simple typedef fields will be shown
+# inline in the documentation of the scope in which they are defined (i.e. file,
+# namespace, or group documentation), provided this scope is documented. If set
+# to NO (the default), structs, classes, and unions are shown on a separate
+# page (for HTML and Man pages) or section (for LaTeX and RTF).
 
 INLINE_SIMPLE_STRUCTS  = NO
 
@@ -339,30 +341,14 @@ INLINE_SIMPLE_STRUCTS  = NO
 
 TYPEDEF_HIDES_STRUCT   = NO
 
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penalty.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will roughly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
-
-SYMBOL_CACHE_SIZE      = 0
-
-# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
-# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
-# their name and scope. Since this can be an expensive process and often the
-# same symbol appear multiple times in the code, doxygen keeps a cache of
-# pre-resolved symbols. If the cache is too small doxygen will become slower.
-# If the cache is too large, memory is wasted. The cache size is given by this
-# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols.
+# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
+# cache is used to resolve symbols given their name and scope. Since this can
+# be an expensive process and often the same symbol appear multiple times in
+# the code, doxygen keeps a cache of pre-resolved symbols. If the cache is too
+# small doxygen will become slower. If the cache is too large, memory is wasted.
+# The cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid
+# range is 0..9, the default is 0, corresponding to a cache size of 2^16 = 65536
+# symbols.
 
 LOOKUP_CACHE_SIZE      = 0
 
@@ -373,7 +359,7 @@ LOOKUP_CACHE_SIZE      = 0
 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
 # documentation are documented, even if no documentation was available.
 # Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+# the EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES
 
 EXTRACT_ALL            = YES
 
@@ -769,8 +755,10 @@ IMAGE_PATH             =
 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
 # input file. Doxygen will then use the output that the filter program writes
 # to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
+# If FILTER_PATTERNS is specified, this tag will be ignored.
+# Note that the filter must not add or remove lines; it is applied before the
+# code is scanned, but not when the output code is generated. If lines are added
+# or removed, the anchors will not be placed correctly.
 
 INPUT_FILTER           =
 
@@ -800,9 +788,9 @@ FILTER_SOURCE_FILES    = NO
 FILTER_SOURCE_PATTERNS =
 
 # If the USE_MD_FILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page (index.html).
-# This can be useful if you have a project on for instance GitHub and want reuse
-# the introduction page also for the doxygen output.
+# is part of the input, its contents will be placed on the main page
+# (index.html). This can be useful if you have a project on for instance GitHub
+# and want reuse the introduction page also for the doxygen output.
 
 USE_MDFILE_AS_MAINPAGE =
 
@@ -862,6 +850,20 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
+# If CLANG_ASSISTED_PARSING is set to YES, then doxygen will use the clang parser
+# for more acurate parsing at the cost of reduced performance. This can be
+# particularly helpful with template rich C++ code for which doxygen's built-in
+# parser lacks the necessairy type information.
+
+CLANG_ASSISTED_PARSING = NO
+
+# If clang assisted parsing is enabled you can provide the compiler with command
+# line options that you would normally use when invoking the compiler. Note that
+# the include paths will already be set by doxygen for the files and directories
+# specified at INPUT and INCLUDE_PATH.
+
+CLANG_OPTIONS          =
+
 #---------------------------------------------------------------------------
 # configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -947,7 +949,7 @@ HTML_EXTRA_STYLESHEET  =
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
 # that these files will be copied to the base HTML output directory. Use the
-# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
 # files. In the HTML_STYLESHEET file, use the file name only. Also note that
 # the files will be copied as-is; there are no commands or markers available.
 
@@ -1216,7 +1218,7 @@ FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
 
 # When MathJax is enabled you can set the default output format to be used for
-# thA MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
+# the MathJax output. Supported types are HTML-CSS, NativeMML (i.e. MathML) and
 # SVG. The default value is HTML-CSS, which is slower, but has the best
 # compatibility.
 
@@ -1239,6 +1241,11 @@ MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 
 MATHJAX_EXTENSIONS     =
 
+# The MATHJAX_CODEFILE tag can be used to specify a file with javascript
+# pieces of code that will be used on startup of the MathJax code.
+
+MATHJAX_CODEFILE       =
+
 # When the SEARCHENGINE tag is enabled doxygen will generate a search box
 # for the HTML output. The underlying search engine uses javascript
 # and DHTML and should work on any modern browser. Note that when using
@@ -1264,8 +1271,8 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain
 # the search results. Doxygen ships with an example indexer (doxyindexer) and
-# search engine (doxysearch.cgi) which are based on the open source search engine
-# library Xapian. See the manual for configuration details.
+# search engine (doxysearch.cgi) which are based on the open source search
+# engine library Xapian. See the manual for configuration details.
 
 EXTERNAL_SEARCH        = NO
 
@@ -1336,7 +1343,7 @@ COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
 # by the printer. Possible values are: a4, letter, legal and
-# executive. If left blank a4wide will be used.
+# executive. If left blank a4 will be used.
 
 PAPER_TYPE             = a4wide
 
@@ -1359,6 +1366,13 @@ LATEX_HEADER           =
 
 LATEX_FOOTER           =
 
+# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images
+# or other source files which should be copied to the LaTeX output directory.
+# Note that the files will be copied as-is; there are no commands or markers
+# available.
+
+LATEX_EXTRA_FILES      =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1503,6 +1517,21 @@ XML_DTD                =
 
 XML_PROGRAMLISTING     = YES
 
+#---------------------------------------------------------------------------
+# configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_DOCBOOK tag is set to YES Doxygen will generate DOCBOOK files
+# that can be used to generate PDF.
+
+GENERATE_DOCBOOK       = NO
+
+# The DOCBOOK_OUTPUT tag is used to specify where the DOCBOOK pages will be put.
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be put in
+# front of it. If left blank docbook will be used as the default path.
+
+DOCBOOK_OUTPUT         = docbook
+
 #---------------------------------------------------------------------------
 # configuration options for the AutoGen Definitions output
 #---------------------------------------------------------------------------
@@ -1653,6 +1682,12 @@ ALLEXTERNALS           = NO
 
 EXTERNAL_GROUPS        = YES
 
+# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed
+# in the related pages index. If set to NO, only the current project's
+# pages will be listed.
+
+EXTERNAL_PAGES         = YES
+
 # The PERL_PATH should be the absolute path and name of the perl script
 # interpreter (i.e. the result of `which perl').
 
@@ -1707,7 +1742,7 @@ DOT_NUM_THREADS        = 0
 # the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
 # directory containing the font.
 
-DOT_FONTNAME           = FreeSans
+DOT_FONTNAME           =
 
 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
 # The default size is 10pt.
@@ -1749,7 +1784,7 @@ UML_LOOK               = NO
 # the class node. If there are many fields or methods and many nodes the
 # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
 # threshold limits the number of items for each type to make the size more
-# managable. Set this to 0 for no limit. Note that the threshold may be
+# manageable. Set this to 0 for no limit. Note that the threshold may be
 # exceeded by 50% before the limit is enforced.
 
 UML_LIMIT_NUM_FIELDS   = 10